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Get the latest NOMP biovolume Excel list

Source: R/plankton_toolbox.R
get_nomp_list.Rd

This function downloads the latest available Nordic Marine Phytoplankton Group (NOMP) biovolume zip archive from SMHI (using cache_nomp_zip()), unzips it, and reads the first Excel file by default. You can also specify which file in the archive to read.

Usage

get_nomp_list(
  year = as.numeric(format(Sys.Date(), "%Y")),
  file = NULL,
  sheet = NULL,
  force = FALSE,
  base_url = NULL,
  clean_cache_days = 30,
  verbose = TRUE
)

Arguments

year

Numeric year to download. Default is current year; if not available, previous years are automatically tried.

file

Character string specifying which file in the zip archive to read. Defaults to the first Excel file in the archive.

sheet

Character or numeric; the name or index of the sheet to read from the Excel file. If neither argument specifies the sheet, defaults to the first sheet.

force

Logical; if TRUE, forces re-download of the zip file even if cached copy exists.

base_url

Base URL (without "/nomp_taxa_biovolumes_and_carbon_YYYY.zip") for the NOMP biovolume files. Defaults to the SMHI directory.

clean_cache_days

Numeric; if not NULL, cached NOMP zip files older than this number of days will be automatically deleted and replaced by a new download. Defaults to 30. Set to NULL to disable automatic cleanup.

verbose

A logical indicating whether to print progress messages. Default is TRUE.

Value

A tibble with the contents of the requested Excel file.

See also

clean_shark4r_cache() to manually clear cached files.

Examples

if (FALSE) { # \dontrun{
  # Get the latest available list
  nomp_list <- get_nomp_list()

  # Get the 2023 list and clean old cache files older than 60 days
  nomp_list_2023 <- get_nomp_list(2023, clean_cache_days = 60)
} # }